Currently, LIBIS supports resources and services at 6 different locations in Baden-Württemberg.

Resources at Heidelberg University

COPASI

Prof. Ursula Kummer

Software suite for the modelling, simulation, and analysis of (bio)chemical processes

Galaxy Image Analysis

Prof. Karl Rohr

Software for the image analysis within the Galaxy-workflow-systems

OmniPath

Prof. Julio Saez-Rodriguez

Data base and analysis tool for the invesitgation of signal transduction pathways

PlantSeg

Prof. Alexis Maizel

Software for the segmentation and analysis of microscopy images of plants

MOFA

Prof. Britta Velten

Software for the analysis of multi-omics-data

Resources at Tübingen University

Support of de.NBI cloud

Dr. Jens Krüger & Prof. Oliver Kohlbacher

Services for the administration of research data, provision of computing power, and user training

OpenMS

Prof. Oliver Kohlbacher

Software-framework for mass spectrometry and proteom-bioinformatics

nf-core

Prof. Sven Nahnsen

International open-source project which provides a crucial infrastructur for the execution of bioinformatics-workflows in a reproducible manner

Resources at University of Freiburg

Support of de.NBI cloud

Dr. Björn Grüning & Prof. Rolf Backofen

Services for the administration of research data, provision of computing power, and user training

Bioconda / Biocontainers

Dr. Björn Grüning

International projects for the packaging and containerization of software packages conda-forge, Bioconda, and BioContainers

Galaxy

Dr. Björn Grüning

Open source, web-based platform for data intensive biomedical research

Mass Spectrometry

Dr. Melanie Föll & Prof. Oliver Schilling

Tools and workflows for mass spectrometry imgaging and translational proteomics

Resources at HITS

SEEK

Dr. Wolfgang Müller

Software for fair data management in the life sciences

SABIO-RK

Dr. Wolfgang Müller

Data base for information on enzyme kinetics

Resources at DKFZ

Support of de.NBI cloud

Dr. Ivo Buchhalter

Services for the administration of research data, provision of computing power, and user training

TelomereHunter

Prof. Benedikt Brors

Software to determine the length and structure of telomers from sequencing data

GenomeRNAi, GenomeCRISPR, E-CRISP

Prof. Michael Boutros

Data base of phenotypes in high-throughput-pertubation-screens as part of the de.NBI and ELIXIR service

Resources at EMBL Heidelberg

Webservices Human Genomics und Metagenomics

Prof. Peer Bork

11 long-standing webservices (SMART, STRING, mOTUs, proGenomes, NGLess, eggNOG, iTOL, iPATH, STITCH & SIDER), which have become standard-services in bioinformatics

Bioconductor Services

Dr. Wolfgang Huber

Well-established R-packages DESeq2, DEXSeq, IHW, biomaRt , rhdf5 tool suite (rhdf5, Rhdf5lib & rhdf5filters), Rarr & EBImage from the Bioconductor ecosystem

ilastik & BioImage Model Zoo

Dr. Anna Kreshuk

Resources for machine-learning-based image analysis

single-cell multi omics and spatial omics Services

Prof. Oliver Stegle

New software services for 'spatial omics' data infrastructure (Spatial Data) and spatial analysis tools (Cell2Location & SpatialDE) & services in single-cell omics